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    bionode-go

    1.0.1 • Public • Published

    bionode-go

    Gene Ontology in Bionode

    Will provide access to the public MySQL services of the Gene Ontology.

    Have a look at go.js how to use go_gene_annotation.js to retrieve GO annotations for a particular gene. It's not much, but it's a start for your own explorations. All of GO can be queried via internet access to their MySQL server. Details and sample queries available here: http://amigo.geneontology.org/goose

    Note: Another quick and dirty way to associate GO terms to target genes is the use of InterMine via their npm module. Alex from FlyMine wrote on 11/12/2014: "Sorry about the lack of good doc links on the NPM page - our API docs are here: http://intermine.github.io/imjs/, and http://alexkalderimis.github.io/imjs/ (mine are sometimes a little ahead of intermine's). I will make sure that they are more discoverable in the future.

    We also have some documentation here: http://intermine.readthedocs.org/en/latest/web-services/#api-and-client-libraries

    With some examples here: http://intermine.readthedocs.org/en/latest/web-services/how-do-i/#howtows

    If there are some examples you want to see, just let us know, and we will add them to the how-do-I section."

    All best,

    Alex Kalderimis

    Install

    npm i bionode-go

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    Version

    1.0.1

    License

    MIT

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